Area 03

Chemical bonding and aromaticity

Design and analysis of species with unconventional bonding, such as planar hypercoordinate carbons, molecular stars and tubular boron motifs.

  • planar hypercoordinate carbon
  • boron clusters
  • aromaticity
  • reaction mechanisms
AdNDP analysis of the planar Au10 cluster: one-center two-electron gold lone pairs and delocalized six-, seven- and ten-center sigma bonds, with occupation numbers close to 2.
Chemical bonding in planar Au10: AdNDP analysis with multicenter σ bonds. Fig. 2 from Rojas-González et al., Molecules (2024). CC BY 4.0

Some molecules defy the classical rules of bonding: carbons with four or five neighbours in a single plane, aromatic rings that include metals, or tubular boron structures. Understanding why they are stable makes it possible to design new species and propose them as experimental targets.

This line combines potential energy surface exploration with chemical bonding and aromaticity analysis tools (electron delocalization, natural orbitals and magnetic response) to explain the stability of these systems.

Representative topics

  • Planar tetra- and pentacoordinate carbons.
  • E₃M₃⁺ molecular stars and 10-π-electron arenes.
  • Tubular motifs and metal-doped boron clusters.
  • Reaction mechanisms and rearrangements, such as helicene racemization or cubyl cation rearrangements.

Much of this work has been carried out in collaboration with theoretical chemistry groups in Mexico, China and Latin America.

Publications in this area

25 publications

  • Jose Manuel Guevara-Vela, J. L. Cabellos-Quiroz, Sebastián Salazar-Colores, P. L. Rodríguez-Kessler, Alvaro Muñoz-Castro

    Structure search for B7Mn2 clusters: Inverse sandwich geometry with a high-spin state

    Computational and Theoretical Chemistry 1254, 115487 (2025)

  • Xue Dong, Yu-qian Liu, William Tiznado, Jose Luis Cabellos-Quiroz, Jijun Zhao, Sudip Pan, Zhong-hua Cui

    Designing a Four-Ring Tubular Boron Motif through Metal Doping

    Inorganic Chemistry 61(37), 14553–14559 (2022)

  • Gairu Yun, Haixia Li, Jose Luis Cabellos, William Tiznado, Zhonghua Cui, Sudip Pan

    Hitting the Bull's Eye: Stable HeBeOH+ Complex

    ChemPhysChem 23(23), e202200587 (2022)

  • Sudip Pan, José Luis Cabellos, Mesías Orozco-Ic, Pratim K. Chattaraj, Lili Zhao, Gabriel Merino

    Planar pentacoordinate carbon in CGa5+ derivatives

    Physical Chemistry Chemical Physics 20(18), 12350–12355 (2018)

  • Estefanía Ravell, Said Jalife, Jorge Barroso, Mesías Orozco-Ic, Gerardo Hernández-Juárez, Filiberto Ortiz-Chi, Sudip Pan, José Luis Cabellos, Gabriel Merino

    Structure and Bonding in CE5− (E = Al–Tl) Clusters: Planar Tetracoordinate Carbon versus Pentacoordinate Carbon

    Chemistry – An Asian Journal 13(11), 1467–1473 (2018)

  • Jorge Barroso, Jose Luis Cabellos, Sudip Pan, Fernando Murillo, Ximena Zarate, Maria A. Fernandez-Herrera, Gabriel Merino

    Revisiting the racemization mechanism of helicenes

    Chemical Communications 54(2), 188–191 (2018)

  • Jin-Chang Guo, Lin-Yan Feng, Ying-Jin Wang, Said Jalife, Alejandro Vásquez-Espinal, José Luis Cabellos, Sudip Pan, Gabriel Merino, Hua-Jin Zhai

    Coaxial Triple-Layered versus Helical Be6B11− Clusters: Dual Structural Fluxionality and Multifold Aromaticity

    Angewandte Chemie International Edition 56(34), 10174–10177 (2017)

  • Maryel Contreras, Sudip Pan, Mesías Orozco-Ic, José Luis Cabellos, Gabriel Merino

    E3M3+ (E = C–Pb, M = Li–Cs) Clusters: The Smallest Molecular Stars

    Chemistry – A European Journal 23(47), 11430–11436 (2017)

  • Fernando Murillo, Alba Vargas-Caamal, Sudip Pan, José Luis Cabellos, Miguel J. Mora-Fonz, Alvaro Muñoz-Castro, Albeiro Restrepo, Gabriel Merino

    Does H4SO5 exist?

    Physical Chemistry Chemical Physics 19(26), 17088–17093 (2017)

  • Saúl H. Martínez, Sudip Pan, José Luis Cabellos, Eugenia Dzib, María A. Fernández-Herrera, Gabriel Merino

    Importance of Dispersion on the Stability of the Concave-Bound CpM (M = Fe, Ru, Os) Complexes of Sumanene

    Organometallics 36(10), 2036–2041 (2017)

  • Zhong-hua Cui, Valentin Vassilev-Galindo, José Luis Cabellos, Edison Osorio, Mesías Orozco, Sudip Pan, Yi-hong Ding, Gabriel Merino

    Planar pentacoordinate carbon atoms embedded in a metallocene framework

    Chemical Communications 53(1), 138–141 (2017)

  • Jorge Barroso, Sukanta Mondal, José Luis Cabellos, Edison Osorio, Sudip Pan, Gabriel Merino

    Structure and Bonding of Alkali-Metal Pentalenides

    Organometallics 36(2), 310–317 (2016)

  • Sukanta Mondal, Edison Osorio, Sudip Pan, José Luis Cabellos, Saul Martínez, Elizabeth Florez, Gabriel Merino

    Why CpAl–Cr(CO)5 is linear while CpIn–Cr(CO)5 is not? Understanding the structure and bonding of the CpE–Cr(CO)5 (E = Group 13 element) complexes

    Theoretical Chemistry Accounts 135(10) (2016)

  • Elizabeth Flórez, Gabriel Merino, José Luis Cabellos, Franklin Ferraro, Albeiro Restrepo, C. Z. Hadad

    Structure and bonding in WCn (n = 2–5) clusters

    Theoretical Chemistry Accounts 135(9) (2016)

  • Elizabeth Flórez, Nancy Acelas, César Ibargüen, Sukanta Mondal, José Luis Cabellos, Gabriel Merino, Albeiro Restrepo

    Microsolvation of NO3−: structural exploration and bonding analysis

    RSC Advances 6(76), 71913–71923 (2016)

  • Said Jalife, Sukanta Mondal, José Luis Cabellos, Sudip Pan, Miguel Ángel Méndez-Rojas, Israel Fernández, Gernot Frenking, Gabriel Merino

    Breaking the Isolated Pentagon Rule by Encapsulating Xe2 in C60: The Guest Defines the Shape of the Host

    ChemistrySelect 1(10), 2405–2408 (2016)

  • Sukanta Mondal, Jose Luis Cabellos, Sudip Pan, Edison Osorio, Juan Jose Torres-Vega, William Tiznado, Albeiro Restrepo, Gabriel Merino

    10-π-Electron arenes à la carte: structure and bonding of the [E–(CnHn)–E]n−6 (E = Ca, Sr, Ba; n = 6–8) complexes

    Physical Chemistry Chemical Physics 18(17), 11909–11918 (2016)

  • Said Jalife, Sukanta Mondal, Jose Luis Cabellos, Gerardo Martinez-Guajardo, Maria A. Fernandez-Herrera, Gabriel Merino

    The cubyl cation rearrangements

    Chemical Communications 52(16), 3403–3405 (2016)

  • Alba Vargas-Caamal, Jose Luis Cabellos, Filiberto Ortiz-Chi, Henry S. Rzepa, Albeiro Restrepo, Gabriel Merino

    How Many Water Molecules Does it Take to Dissociate HCl?

    Chemistry – A European Journal 22(8), 2812–2818 (2016)

  • Alba Vargas-Caamal, Sudip Pan, Filiberto Ortiz-Chi, Jose Luis Cabellos, Roberto A. Boto, Julia Contreras-Garcia, Albeiro Restrepo, Pratim K. Chattaraj, Gabriel Merino

    How strong are the metallocene–metallocene interactions? Cases of ferrocene, ruthenocene, and osmocene

    Physical Chemistry Chemical Physics 18(1), 550–556 (2016)

  • Zhong-hua Cui, Yi-hong Ding, José Luis Cabellos, Edison Osorio, Rafael Islas, Albeiro Restrepo, Gabriel Merino

    Planar tetracoordinate carbons with a double bond in CAl3E clusters

    Physical Chemistry Chemical Physics 17(14), 8769–8775 (2015)

  • Rafael Grande-Aztatzi, José Luis Cabellos, Rafael Islas, Ivan Infante, José M. Mercero, Albeiro Restrepo, Gabriel Merino

    Planar pentacoordinate carbons in CBe54− derivatives

    Physical Chemistry Chemical Physics 17(6), 4620–4624 (2015)

  • Sudip Pan, Diego Moreno, José Luis Cabellos, Gabriel Merino, Pratim K. Chattaraj

    Ab Initio Study on the Stability of NgnBe2N2, NgnBe3N2 and NgBeSiN2 Clusters

    ChemPhysChem 15(12), 2618–2625 (2014)

  • Abril C. Castro, Edison Osorio, José Luis Cabellos, Erick Cerpa, Eduard Matito, Miquel Solà, Marcel Swart, Gabriel Merino

    Exploring the Potential Energy Surface of E2P4 Clusters (E = Group 13 Element): The Quest for Inverse Carbon-Free Sandwiches

    Chemistry – A European Journal 20(16), 4583–4590 (2014)

  • Sudip Pan, Diego Moreno, José Luis Cabellos, Jonathan Romero, Andres Reyes, Gabriel Merino, Pratim K. Chattaraj

    In Quest of Strong Be–Ng Bonds among the Neutral Ng–Be Complexes

    The Journal of Physical Chemistry A 118(2), 487–494 (2013)

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